{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# Part III - C: Analyzing Changing Trends in Academia - Journal Trends" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## 3. Journal Dynamics\n", "In the previous notebook, we reviewed how papers' properties and authors' publication behaviors have changed over time. In this notebook, we going to utilize the SJR and MAG datasets to observe how journals' properties have changed over the last two centuries. First, let's load the required packages." ] }, { "cell_type": "code", "execution_count": 1, "metadata": {}, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "/home/michael/anaconda2/lib/python2.7/site-packages/h5py/__init__.py:36: FutureWarning: Conversion of the second argument of issubdtype from `float` to `np.floating` is deprecated. In future, it will be treated as `np.float64 == np.dtype(float).type`.\n", " from ._conv import register_converters as _register_converters\n", "/home/michael/anaconda2/lib/python2.7/site-packages/entrypoints.py:171: DeprecationWarning: You passed a bytestring as `filenames`. This will not work on Python 3. Use `cp.read_file()` or switch to using Unicode strings across the board.\n", " cp.read(path)\n", "/home/michael/anaconda2/lib/python2.7/importlib/__init__.py:37: DeprecationWarning: The vega3 module is deprecated. Use vega instead.\n", " __import__(name)\n" ] } ], "source": [ "from configs import *\n", "import pandas as pd\n", "import numpy as np\n", "import altair as alt\n", "alt.renderers.enable('notebook')\n", "from visualization.visual_utils import *\n", "import turicreate.aggregate as agg" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "### 3.1 Number of Journals over Time" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "In this section, we will examine how the number of journals has changed over time. Let's start by exploring the number of active journals each year, and also the number of new journals added each year." ] }, { "cell_type": "code", "execution_count": 2, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
Year | \n", "Journal ID | \n", "Normalized venue name | \n", "Original venue name | \n", "Paper ID | \n", "
---|---|---|---|---|
2008 | \n", "0655F58A | \n", "icoin | \n", "international conference on information networ ... | \n",
" 7CF1E376 | \n", "
2012 | \n", "08D7401B | \n", "ppopp | \n", "acm sigplan symposium on principles and practice ... | \n",
" 7A21777D | \n", "
1999 | \n", "08D7401B | \n", "ppopp | \n", "acm sigplan symposium on principles and practice ... | \n",
" 8132F9B1 | \n", "
1991 | \n", "08D7401B | \n", "ppopp | \n", "acm sigplan symposium on principles and practice ... | \n",
" 7C74C2D1 | \n", "
1993 | \n", "08D7401B | \n", "ppopp | \n", "acm sigplan symposium on principles and practice ... | \n",
" 7FDBE7A5 | \n", "
1995 | \n", "08D7401B | \n", "ppopp | \n", "acm sigplan symposium on principles and practice ... | \n",
" 80DC91D5 | \n", "
1995 | \n", "08D7401B | \n", "ppopp | \n", "acm sigplan symposium on principles and practice ... | \n",
" 807C58E9 | \n", "
1995 | \n", "08D7401B | \n", "ppopp | \n", "acm sigplan symposium on principles and practice ... | \n",
" 80518538 | \n", "
1999 | \n", "08D7401B | \n", "ppopp | \n", "acm sigplan symposium on principles and practice ... | \n",
" 7D01402A | \n", "
2012 | \n", "08D7401B | \n", "ppopp | \n", "acm sigplan symposium on principles and practice ... | \n",
" 8092C992 | \n", "
Title | \n", "Total Docs. | \n", "
---|---|
PLoS ONE | \n", "32402 | \n", "
RSC Advances | \n", "8476 | \n", "
Journal of Physics: Conference Series ... | \n",
" 5907 | \n", "
Applied Physics Letters | \n", "5022 | \n", "
Physical Review B - Condensed Matter and ... | \n",
" 4898 | \n", "
Methods in molecular biology (Clifton, N.J.) ... | \n",
" 4631 | \n", "
Journal of Applied Physics ... | \n",
" 4207 | \n", "
Proceedings of the National Academy of ... | \n",
" 4205 | \n", "
Economist | \n", "4070 | \n", "
Key Engineering Materials | \n", "4065 | \n", "
Title | \n", "Total Docs. | \n", "
---|---|
Journal of Biological Chemistry ... | \n",
" 5397 | \n", "
Physical Review B - Condensed Matter and ... | \n",
" 4556 | \n", "
SAE Technical Papers | \n", "2902 | \n", "
Lancet | \n", "2894 | \n", "
Proceedings of the National Academy of ... | \n",
" 2830 | \n", "
Journal of Applied Physics ... | \n",
" 2738 | \n", "
Physical Review Letters | \n", "2696 | \n", "
British Medical Journal | \n", "2645 | \n", "
Applied Physics Letters | \n", "2585 | \n", "
Journal of Chemical Physics ... | \n",
" 2547 | \n", "
Cites / Doc. (2years) | \n", "H index | \n", "Rank | \n", "SJR | \n", "SJR Best Quartile | \n", "Title | \n", "Total Docs. | \n", "
---|---|---|---|---|---|---|
0.03 | \n", "7 | \n", "28587 | \n", "0.1 | \n", "Q4 | \n", "TLS - The Times Literary Supplement ... | \n",
" 1362 | \n", "
3.5 | \n", "120 | \n", "2539 | \n", "1.363 | \n", "Q1 | \n", "Organic and Biomolecular Chemistry ... | \n",
" 1196 | \n", "
4.76 | \n", "192 | \n", "2558 | \n", "1.357 | \n", "Q1 | \n", "Electrochimica Acta | \n", "2471 | \n", "
0.89 | \n", "38 | \n", "15079 | \n", "0.23 | \n", "Q3 | \n", "Journal of Computational and Theoretical ... | \n",
" 1533 | \n", "
8.78 | \n", "176 | \n", "578 | \n", "3.051 | \n", "Q1 | \n", "Renewable and Sustainable Energy Reviews ... | \n",
" 1354 | \n", "
4.95 | \n", "134 | \n", "1267 | \n", "1.999 | \n", "Q1 | \n", "Energy | \n", "1619 | \n", "
3.81 | \n", "282 | \n", "2043 | \n", "1.55 | \n", "Q1 | \n", "Langmuir | \n", "1542 | \n", "
3.82 | \n", "85 | \n", "4918 | \n", "0.872 | \n", "Q2 | \n", "International Journal of Biological Macromolec ... | \n",
" 1216 | \n", "
2.73 | \n", "62 | \n", "5159 | \n", "0.834 | \n", "Q1 | \n", "Materials | \n", "1026 | \n", "
3.89 | \n", "88 | \n", "1719 | \n", "1.706 | \n", "Q2 | \n", "Molecular Neurobiology | \n", "1061 | \n", "
Type | \n", "Year | \n", "
---|---|
journal | \n", "2016 | \n", "
journal | \n", "2016 | \n", "
journal | \n", "2016 | \n", "
journal | \n", "2016 | \n", "
journal | \n", "2016 | \n", "
journal | \n", "2016 | \n", "
journal | \n", "2016 | \n", "
journal | \n", "2016 | \n", "
journal | \n", "2016 | \n", "
journal | \n", "2016 | \n", "
SJR Best Quartile | \n", "Year | \n", "Papers Number | \n", "Total Papers | \n", "Percentage of Papers | \n", "
---|---|---|---|---|
Q1 | \n", "2016 | \n", "1187514 | \n", "2313231 | \n", "0.513357291165 | \n", "
Q2 | \n", "2016 | \n", "554782 | \n", "2313231 | \n", "0.239829917548 | \n", "
Q3 | \n", "2016 | \n", "371076 | \n", "2313231 | \n", "0.160414588945 | \n", "
Q4 | \n", "2016 | \n", "199859 | \n", "2313231 | \n", "0.0863982023412 | \n", "
Journal ID mapped to venue name ... | \n",
" Original venue name | \n", "
---|---|
079E7DE4 | \n", "Nature Methods | \n", "
07A3050E | \n", "Cell Stem Cell | \n", "
008282E5 | \n", "Nature Reviews Genetics | \n", "
090B6496 | \n", "Nature Cell Biology | \n", "
05B0AD9A | \n", "Econometrica | \n", "
003B355D | \n", "Science | \n", "
06315123 | \n", "Nature Materials | \n", "
00775C57 | \n", "Nature Nanotechnology | \n", "
045DDE15 | \n", "Reviews of Modern Physics | \n", "
0838449D | \n", "Nature Genetics | \n", "
Journal ID mapped to venue name ... | \n",
" Count | \n", "Journal name | \n", "Paper IDs List | \n", "Original venue name | \n", "
---|---|---|---|---|
0590C518 | \n", "1035 | \n", "nature reviews immunology | \n", "[7D640933, 765F2C22, 7700AA0B, 76190870, ... | \n",
" Nature Reviews Immunology | \n", "
06954C9D | \n", "17034 | \n", "cell | \n", "[7D51DD43, 7597ABFA, 76E80A08, 772565EE, ... | \n",
" Cell | \n", "
079E7DE4 | \n", "1766 | \n", "nature methods | \n", "[7E51EE0D, 76C89A04, 778D8956, 7728C2C7, ... | \n",
" Nature Methods | \n", "
0004D416 | \n", "3009 | \n", "chemical society reviews | \n", "[77A3264A, 7D75A048, 7DA181DF, 755B4EBF, ... | \n",
" Chemical Society Reviews | \n", "
05B0AD9A | \n", "941 | \n", "econometrica | \n", "[7E4970EC, 77F51B50, 77C77C9D, 76E42D63, ... | \n",
" Econometrica | \n", "
045DDE15 | \n", "90 | \n", "reviews of modern physics | \n", "[7F807BDE, 791B915D, 7E731DEA, 7D019254, ... | \n",
" Reviews of Modern Physics | \n", "
0C1D733E | \n", "5180 | \n", "nature medicine | \n", "[766B176F, 7561AF20, 69494EC8, 7EA45985, ... | \n",
" Nature Medicine | \n", "
00775C57 | \n", "1238 | \n", "nature nanotechnology | \n", "[76E1BD47, 75AB81CE, 7721BDEE, 7E59160D, ... | \n",
" Nature Nanotechnology | \n", "
0335D7A3 | \n", "580 | \n", "annual review of biochemistry ... | \n",
" [76993443, 757A2205, 7E6135BE, 7F26BFAB, ... | \n",
" Annual Review of Biochemistry ... | \n",
"
0362BB51 | \n", "1014 | \n", "nature reviews microbiology ... | \n",
" [76FA8E47, 75BCFB6F, 7590F85A, 75B375B6, ... | \n",
" Nature Reviews Microbiology ... | \n",
"
Feature Name | \n", "Value | \n", "Venue Name | \n", "Year | \n", "
---|---|---|---|
percentage_of_papers_with _authors_that_publish ... | \n",
" 0.0 | \n", "Nature Genetics | \n", "1992 | \n", "
percentage_of_papers_with _authors_that_publish ... | \n",
" 0.337719298246 | \n", "Nature Genetics | \n", "1993 | \n", "
percentage_of_papers_with _authors_that_publish ... | \n",
" 0.542372881356 | \n", "Nature Genetics | \n", "1994 | \n", "
percentage_of_papers_with _authors_that_publish ... | \n",
" 0.525547445255 | \n", "Nature Genetics | \n", "1995 | \n", "
percentage_of_papers_with _authors_that_publish ... | \n",
" 0.578595317726 | \n", "Nature Genetics | \n", "1996 | \n", "
percentage_of_papers_with _authors_that_publish ... | \n",
" 0.546979865772 | \n", "Nature Genetics | \n", "1997 | \n", "
percentage_of_papers_with _authors_that_publish ... | \n",
" 0.644329896907 | \n", "Nature Genetics | \n", "1998 | \n", "
percentage_of_papers_with _authors_that_publish ... | \n",
" 0.66091954023 | \n", "Nature Genetics | \n", "1999 | \n", "
percentage_of_papers_with _authors_that_publish ... | \n",
" 0.681415929204 | \n", "Nature Genetics | \n", "2000 | \n", "
percentage_of_papers_with _authors_that_publish ... | \n",
" 0.668604651163 | \n", "Nature Genetics | \n", "2001 | \n", "
Feature Name | \n", "Value | \n", "Venue Name | \n", "Year | \n", "
---|---|---|---|
percentage_of_papers_with _authors_that_publish ... | \n",
" 0.866071428571 | \n", "Nature Genetics | \n", "2014 | \n", "